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autodock

Question tag: autodock 13 Questions

0 Votes 1 Ans

When AutoDock 4 performs conformational clustering on the docking results, which atoms are used in the clustering?

atoms autodock clustering conformational DOCKING performs results Used

0 Votes 1 Ans

What do I have to do download AutoDock?

autodock download

0 Votes 1 Ans

Where do I set the AutoDock 4 force field parameters?

autodock field force parameters

0 Votes 1 Ans

Ive heard there is a mailing list for AutoDock, called “ADL”. How do I join?

ADL autodock called heard join list mailing

0 Votes 1 Ans

I want to search the ADL (AutoDock mailing list) archives. How do I do it?

ADL Archives autodock list mailing search

0 Votes 1 Ans

I have downloaded AutoDock, but it does not include ADT (the graphical user interface, also known as AutoDockTools). How do I download ADT?

ADT autodock download downloaded graphical interface known user

0 Votes 1 Ans

Can AutoDock be used when the structure of the ligand and the protein are both known, but the location of the binding site is unknown?

autodock Binding known ligand location protein site structure unknown Used

0 Votes 1 Ans

I know that AutoDock needs hydrogen atoms on the macromolecule and the ligand, but should I use polar hydrogens?

atoms autodock Hydrogen hydrogens ligand macromolecule Needs polar

0 Votes 1 Ans

Ive downloaded the tar.gz file containing the AutoDock and AutoGrid executables. How do I install them?

autodock autogrid containing downloaded executables file install tar.gz

0 Votes 1 Ans

How do I install AutoDock, AutoGrid and ADT on Windows?

ADT autodock autogrid install Windows

0 Votes 1 Ans

Something didn work as I expected, when using AutoGrid, AutoDock or ADT. How should I report a bug?

ADT autodock autogrid bug report

0 Votes 1 Ans

How do I tell AutoGrid/AutoDock where input files are?

autodock autogrid files input

0 Votes 1 Ans

The first time I try to run AutoDock, I get a “segmentation fault” error. How can I fix it?

autodock Error run segmentation fault time Try