Important Notice: Our web hosting provider recently started charging us for additional visits, which was unexpected. In response, we're seeking donations. Depending on the situation, we may explore different monetization options for our Community and Expert Contributors. It's crucial to provide more returns for their expertise and offer more Expert Validated Answers or AI Validated Answers. Learn more about our hosting issue here.

paup*

Question tag: paup* 23 Questions

0 Votes 1 Ans

Is there a version of PAUP* that will work natively under Mac OS X?

mac os x natively paup* version

0 Votes 1 Ans

How does PAUP* deal with missing characters under the parsimony criterion?

characters criterion deal MISSING parsimony paup*

0 Votes 1 Ans

How does PAUP* deal with missing characters under the likelihood criterion?

characters criterion deal MISSING paup*

0 Votes 1 Ans

How do I import non-NEXUS formatted files into PAUP*?

files import paup*

0 Votes 1 Ans

How do I tell PAUP* to ignore certain characters (sites) in further analyses?

Analyses certain characters paup* sites

0 Votes 1 Ans

Why can I get PAUP* to save branch length on the bootstrap consensus tree?

bootstrap branch consensus LENGTH paup* tree

0 Votes 1 Ans

How do I tell PAUP* to ignore certain taxa in further analyses?

Analyses certain paup* taxa

0 Votes 1 Ans

Why does PAUP* tell me that my stepmatrix violates the triangle inequality?

inequality paup* stepmatrix Triangle violates

0 Votes 1 Ans

How can I limit the number of rearrangements PAUP* evaluates during a heuristic search?

evaluates heuristic limit paup* rearrangements search

0 Votes 1 Ans

How do I ask PAUP* to examine every possible tree topology?

examine paup* possible Topology tree

0 Votes 1 Ans

How do I tell PAUP* to use taxa that I previously told it to ignore?

paup* taxa

0 Votes 1 Ans

Is PAUP* Year 2000 Compliant?

compliant paup* year

0 Votes 1 Ans

What are the maximum dimensions (i.e., characters x sequences) of a data matrix that PAUP* will read?

characters Data dimensions matrix maximum paup* read sequences

0 Votes 1 Ans

What is the maximum number of character states that can be assigned to a character in PAUP*?

character maximum paup*

0 Votes 1 Ans

Why does PAUP* warn me that the stepmatrix supplied in Xu and Miranker (2004, “A metric model of amino acid substitution”, Bioninformatics 20:1214-1221) is “internally inconsistent”?

amino acid metric model paup* stepmatrix supplied WARN xu

0 Votes 1 Ans

How do a import a pairwise distance matrix from another program into PAUP*?

distance import matrix pairwise paup* program

0 Votes 1 Ans

Is there a version of PAUP* that will run a search in parallel on a multiple processor machine or a cluster of machines?

cluster Machine machines parallel paup* processor run search version

0 Votes 1 Ans

How do I tell PAUP* to estimate the transition/transversion ratio when using the HKY substitution model?

estimate model paup* ratio substitution transversion

0 Votes 1 Ans

How do I tell PAUP* to read in trees previously saved in a file?

file paup* read Saved trees

0 Votes 1 Ans

How do I tell PAUP* to save the trees currently in memory to a file?

Currently file memory paup* trees