Can motif-x find motifs in DNA data?
Yes. At the current time however, none of the background data sets are DNA-based, so if you wish to do a DNA analysis you will need to upload your own background data set or use the “use foreground, unaligned” background option if you have a fairly large FASTA file. You should also keep in mind that it may be necessary to lower the significance threshold a good deal for DNA analyses.
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