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How do I get the relative probabilities for each ancestral base assignment?

April 26, 2017ancestral assignment base probabilities relative

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How do I get the relative probabilities for each ancestral base assignment?

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There are basically two step to getting the relative probabilities of each base assignment. First you need to tell PAUP to display the values when characters are reconstructed and then you’ll need to reconstruct the characters. The following block shows how this may be done.