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How is the tag sequence trimming done and low-quality reads removed?

READS removed sequence trimming
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How is the tag sequence trimming done and low-quality reads removed?

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For each read from the GS-FLX Sequencer we trim primer bases from the beginning and the end of each read, and remove sequences likely to be of low-quality based on our assessment of pyrosequencing error rates (Huse et al, 2007).

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