I am using the DOS version of BLAST under Windows. What can I do to optimize BLASTs performance in a DOS window?
When you install BLAST, the installation program asks if you are going to use BLAST under Windows. If you say yes, a line is added to your APPS.INF file. You may later create a BLAST.PIF file that has appropriate settings for running BLAST under Windows. Call BLAST Technical Support for further information on using BLAST under Windows.