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I do not understand the meaning of the “Function” category or any of its components (e.g. synonymous, contig reference, nonsynonymous)?

April 26, 2017category components contig function nonsynonymous Reference synonymous understand

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I do not understand the meaning of the “Function” category or any of its components (e.g. synonymous, contig reference, nonsynonymous)?

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I noticed in the documentation where “coding nonsynonymous” is mentioned as a SNP function class, yet, I don’t think I’ve ever seen it used. Instead I see the term “missense”.