I want to screen the InterPro database using taxonomic input rather than sequences input. How do I do this?
We have just started to store taxonomic data in InterPro, retrieved from the UniProt entries. To get the proteins of interest, in the SRS- based text search it is possible to choose the “organism” from the protein entries and InterPro entry by name or accession number. The results may be retrieved in different formats. Alternatively you can also get the information you need directly from SRS(http://srs.ebi.ac.uk/): set up your “Views” to include InterPro matches. Once you have saved the view, go to the query page and from the UniProt database choose the taxonomic group of interest either by name or tax ID as the query (use “Extended” search). Once you have results, in the “Results” page select the InterPro View you saved and “Combine”. This will list all the proteins from the taxonomic group with the corresponding InterPro matches.