In the “Integrated Maps” section of rs55956772, it appears that each assembly maps the refSNP to different chromosomes without overlap. Is this due to small flanking sequence?

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In the “Integrated Maps” section of rs55956772, it appears that each assembly maps the refSNP to different chromosomes without overlap. Is this due to small flanking sequence?

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rs6523677 is annotated as “A” in the reference sequences, but the genotyping (HapMap) of 300 individuals shows a “C” for all alleles. It’s very unlikely that genotyping of any 300 individuals will show a “C” allele 300 times.

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