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Bioperl is a toolkit of perl modules useful in building bioinformatics solutions in perl. It is built in an object-oriented manner so that many modules depend on each other to achieve a task. The collection of modules in the bioperl-live repository consist of the core of the functionality of bioperl. Additionally auxiliary modules for creating graphical interfaces (bioperl-gui), persistent storage in RDMBS (bioperl-db), running and parsing the results from hundreds of bioinformatics applications (bioperl-run), software to automate bioinformatic analyses (bioperl-pipeline), and CORBA bridges to the BioCORBA (http://www.biocorba.org) specification (bioperl-corba-server and bioperl-corba-client) are all available as CVS modules in our repository.
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Bioperl is a tookit of perl modules useful in building bioinformatics solutions in perl. It is built in an object-oriented manner so that many modules depend on each other to achieve a task. The collection of modules in the bioperl-live repository consist of the core of the functionality of bioperl. Additionally auxiliary modules for creating graphical interfaces (bioperl-gui), persistent storage in RDMBS (bioperl-db), running and parsing the results from hundreds of bioinformatics applications (bioperl-run), software to automate bioinformatic analyses (bioperl-pipeline), and CORBA bridges to the BioCORBA (http://www.biocorba.org) specification (bioperl-corba-server and bioperl-corba-client) are all available as CVS modules in our repository.
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BioPerl is a toolkit of perl modules useful in building bioinformatics solutions in Perl. It is built in an object-oriented manner so that many modules depend on each other to achieve a task. The collection of modules in the bioperl-live repository consist of the core of the functionality of bioperl. Additionally auxiliary modules for creating graphical interfaces (bioperl-gui), persistent storage in RDMBS (bioperl-db), running and parsing the results from hundreds of bioinformatics applications (Run package), software to automate bioinformatic analyses (bioperl-pipeline) are all available as Subversion modules in our repository.
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What is Bioperl?
Related Questions
- Please cite it as: Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, Dagdigian C, Fuellen G, Gilbert ...
- We are trying to build a standard starting point for analysis application which will probably look like Bio:: ...
- We suggest the following. Post your idea to the appropriate mailing list. If it is a really new idea consider ...
- There are a number of approaches. Within Bioperl take a look at Bio::Tools::SeqPattern. Or, take a look at ...
- We have a universal version number for a release. This is set in the module Bio::Root::Version which is ...