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A5. To ready a portion of the cluster for an application run, PBS and MPI must work together, and our aim is to have the different implementations of MPI show the end user the same behavior. ... more
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A3. At present Scali MPI does not have a Fortran 90 interface, applications with "use mpi" will need to "include mpif.h" instead. ... more
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Yes. XRC (eXtended Reliable Connection) decreases the memory consumption of Open MPI and improves its scalability by significantly decreasing number of QPs per machine. XRC is available on Mellanox ConnectX family HCAs with OFED 1.4 and later. See ... more
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When a system administrator configures VLAN in RoCE, every VLAN is assigned with its own GID. ... more
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RoCE is fully supported as of the Open MPI v1.4.4 release. For more details on how to run Open MPI over RoCE, see this FAQ entry. 4. I have an OFED-based cluster; will Open MPI work with that? Yes. OFED (OpenFabrics Enterprise Distribution) is ... more
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MPI membership belongs to the individual - therefore we cannot place your contact information in another's place. ... more
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Some examples from the NERSC workload include the Gyrokinetic Toroidal Code (GTC) for particle-in-cell plasma physics; the Parallel Total Energy Code (PARATEC) for electronic structure via the DFT method; the finite-volume Community Atmosphere ... more
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A typical scenario is to use MPI for domain decomposition with four or eight MPI processes per node and then use the remaining cores for OpenMP threads of parallelism within each domain. Frequently, this additional parallelism is at the loop level ... more
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There are four common reasons why this might happen: • There is a portion of the code (in terms of runtime) that is not OpenMP parallelized or that contains a serializing construct such as a critical section or atomic operation; • The loops that ... more
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As of this writing, Open PBS is so ancient that we are not aware of any sites running it. As such, we have never tested Open MPI with Open PBS and therefore do not know if it would work or not. 3. How does Open MPI get the list of hosts from Torque / ... more
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