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How do I decide between using the Affymetrix platform versus the Illumina platform for gene expression?

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How do I decide between using the Affymetrix platform versus the Illumina platform for gene expression?

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There are a few factors to consider when deciding on the correct platform for a microarray gene expression project. Both platforms demonstrate good consistency from chip to chip or sample to sample with excellent CVs. Cost is often a factor for researchers and the Illumina platform has a lower per-sample cost than the Affymetrix platform. Sample number is also a consideration as the Illumina beadchip design requires that samples be submitted in groups of 6, 8, or 12 at a time whereas the Affymetrix platform uses one chip per sample. Before beginning a project, please consider these factors. If you need further assistance with project consultation, please feel free to contact us at genome@dnacore.org.

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