Important Notice: Our web hosting provider recently started charging us for additional visits, which was unexpected. In response, we're seeking donations. Depending on the situation, we may explore different monetization options for our Community and Expert Contributors. It's crucial to provide more returns for their expertise and offer more Expert Validated Answers or AI Validated Answers. Learn more about our hosting issue here.

How do include planar peptides restraints?

peptides planar restraints
0
10 Posted

How do include planar peptides restraints?

0

By default, the refmac link library used by Coot does not include a planar restraint incorporating both CA atoms linked by a peptide. After version 0.1 you can use the function (add-planar-peptide-restraints) After version 0.3 you can use the Extensions menu to add (or remove) them. As of version 0.4 the default is to have peptide plane restraints ON. If using an old Coot, you can add plane 2 CA to the _chem_link_plane.plane_id for the TRANS link in $COOT_PREFIX/share/coot/lib/data/monomers/list/mon_lib_list.cif Here is a patch to do that.

0

By default, the refmac link library used by Coot now does include a planar restraint incorporating both CA atoms linked by a peptide. As of version 0.4 the default is to have peptide plane restraints ON.

Related Questions

What is your question?

*Sadly, we had to bring back ads too. Hopefully more targeted.