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dbsnp

Question tag: dbsnp 46 Questions

0 Votes 1 Ans

Does dbSNP have a search that will take a sequence accession (or gi number) as input and will return the SNP information for that sequence?

Accession dbsnp GI input Return search sequence SNP

0 Votes 1 Ans

I’ve tried without success to find human SNPs from a publication in dbSNP using the IDs mentioned in the article as well as the author’s name. Is there anything else I can try?

Article author dbsnp Human I’ve IDs mentioned publication SNPs success

0 Votes 1 Ans

Can you show me the overall growth of dbSNP over the years since its inception?

dbsnp growth inception overall

0 Votes 1 Ans

I have just downloaded the b125 XML files from the dbSNP ftp site and can’t find the population/frequency information. Why did you take it out?

dbsnp downloaded files Frequency FTP population site XML

0 Votes 1 Ans

Published Mutations in dbSNP?

dbsnp mutations published

0 Votes 1 Ans

How do I determine the orientation of dbSNP’s allele frequency data?

Allele Data dbsnp determine Frequency Orientation

0 Votes 1 Ans

I just created a local copy of human dbSNP, but my routine failed to load files such as SubSNPSeq3_p2, SubSNPSeq3_p2_human and the like. Are the files broken down into subsets?

copy dbsnp failed files Human load local routine

0 Votes 1 Ans

How do I determine orientation of a SNP allele (rs9934438) in dbSNP, and then find the corresponding strand and position information in the UCSC genome browser?

Allele dbsnp determine Orientation position SNP strand

0 Votes 1 Ans

Im new to dbSNP and am a little confused about the definitions of ss numbers and rs numbers. What is the difference between the two?

confused dbsnp little Numbers Rs SS

0 Votes 1 Ans

Why does dbSNP refer to an A/G variation in the sequence and ancestral description of rs2476601, when several reference publications indicate that it is a 1858C>T polymorphism?

ancestral dbsnp description Publications refer Reference sequence variation

0 Votes 1 Ans

What criteria does dbSNP use to determine double-hit SNPs independently of Dr. Jim Mullikins algorithm?

ALGORITHM criteria dbsnp determine double-hit Dr jim mullikin SNPs

0 Votes 1 Ans

Because dbSNP contains Dr. Jim Mullikin’s double-hit SNPs, can you tell me what method he uses to determine these double-hits?

dbsnp determine double-hit Dr jim mullikin method SNPs uses

0 Votes 1 Ans

How do I search dbSNP?

0 Votes 1 Ans

Does dbSNP offer bioMart service?

biomart dbsnp Offer service

0 Votes 1 Ans

How do I identify all dbSNP frequency data coming from the HapMap CEU population?

CEU coming Data dbsnp Frequency hapmap identify population

0 Votes 1 Ans

How do I access allele frequencies in dbSNP?

Allele dbsnp frequencies

0 Votes 1 Ans

Is there a way to determine if a triallelic SNP in dbSNP was found in a single individual?

dbsnp determine individual SNP

0 Votes 1 Ans

When I search the dbSNP database for “microsatellite” with Limits of coding nonsynonymous and Homo sapiens, none of the records I retrieve contains the term “microsatellite”. Why?

coding database dbsnp homo sapiens limits nonsynonymous records search

0 Votes 1 Ans

Can you tell me how can I extract information from dbSNP using a list of SNPs from our own computer environment?

Computer dbsnp Environment Extract list SNPs

0 Votes 1 Ans

How do I find the genotypes for rs2074192 in dbSNP?

dbsnp genotypes