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Does Roche NimbleGen scale ChIP-chip data?

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Does Roche NimbleGen scale ChIP-chip data?

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Yes, Roche NimbleGen scales the ratios in the .gff files by subtracting the bi-weight mean for the log-ratio values from each log-ratio value. If you would like more information about how to calculate a Tukey bi-weight mean scaling please go to Bi-Weight Scale.

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