How can I run BatchMin without the MacroModel front end?
This is described in the BatchMin Reference Manual, Chapter 3. You will also have to familiarize yourself with some of the commands that BatchMin accepts. These are described in the BatchMin Reference Manual, Chapter 4, and a number of examples are given in the MacroModel Primer. It is often easiest to start with an existing BatchMin command file (for instance, one created by a MacroModel process) and edit it to suit one’s needs. These BatchMin command files generally have the suffix .com. Q6.
