How do I permanently delete e-mail messages in Thunderbird?
Most people are not aware of this, but when you delete an e-mail message with most e-mail clients, you do not actually delete the message. The message is simple flagged so that it does not appear in the e-mail list. Thunderbird never actually deletes a message unless you take some extra steps. First, select File, Empty Trash. Second, select File, Compact Folders. This deletes all of the flagged messages in the data files.