I have a small image set (20 images), should I use CellProfiler Analyst?
For simple analyses of small image sets (creating plots or sorting data by one particular measurement), it’s probably more convenient to use the built-in CellProfiler data tools or a spreadsheet program like Excel after exporting your data with CellProfiler’s ExportToExcel module or data tool. CellProfiler Analyst is more useful for large data sets or sophisticated analyses; it has several built in features that will help you create histograms, scatterplots, classify your data by a particular phenotype, and score your classified results. CellProfiler Analyst is a great tool for data exploration, especially if you need a simple-to-use program to help you view your data in several formats.
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