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I tried to compute coverage with igvtools and nothing was created. Whats wrong?

April 26, 2017compute coverage wrong

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Posted

I tried to compute coverage with igvtools and nothing was created. Whats wrong?

1 Answer

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Posted

Check the console output for error messages. The most common causes for this are the two problems noted above for loading BAM files, and attempting to compute coverage on an unsorted file.