What are the softwares I can use?
• maltab -> Mathematic Software package • gromacs -> Molecular Dynamics package • rasmol -> Molecular Graphics Software • meme -> For discovering and using protein and DNA sequence motifs • BioProspector -> A DNA seqence motif finding program • NCBI tools, blast, psiblast … • dsspcmbi -> Secondary structure assignment • stride -> Secondary structure assignment • Acrobat reader 5 -> to Run, type “acroread” • grace -> Data analysis and graphics generating • Modeller 6.