Which program is used to make professional animes?
Most animation software is made specifically for that studio to fit it’s individual needs, so the software is custom and doesn’t have a brand name. The software is really expensive and runs upwards from what would be roughly equivalent to 700 dollars.
You can still find hand drawn animes along side computer-animated anime, but the production process of story boarding, voice acting, cell production,character design, and drafting has remained the same for all anime, so when you see shows like Naruto and Bleach they each went through the same processes to eventually end up on your screen.